Andrelab

Publications

  • Mehmeti M, Bergenfelz C, Källberg E, Millrud C, Björk P, Ivars F, Johansson-Lindbom B, Kjellström S, André I, Leandersson K. Wnt5a is a TLR2/4-ligand that induces tolerance in human myeloid cells. Commun Biol. 2019 May 9;2:176. doi: 10.1038/s42003-019-0432-4.

  • Lizatović R, Assent M, Barendregt A, Dahlin J, Bille A, Satzinger K, Tupina D, Heck AJR, Wennmalm S, André I. A Protein-Based Encapsulation System with Calcium-Controlled Cargo Loading and Detachment. Angew Chem Int Ed Engl. 2018 Aug 27;57(35):11334-11338. 

  •  Potrzebowski W, Trewhella J, André I. Bayesian inference of protein conformational ensembles from limited structural data. PLoS Computational Biology. 2018. 14, 12, e1006641. 

  • André I, Belic S. Computational assessment of folding energy landscapes in heterodimeric coiled coils. Proteins. 2018. July 86(7):790-801. 

  • André I. Modeling the Structure of Helical Assemblies with Experimental Constraints in Rosetta. Methods Mol Biol. 2018;1764:475-489.

  • Regenthal P, Hansen JS, André I, Lindkvist-Petersson K. Thermal stability and structural changes in bacterial toxins responsible for food poisoning. PLoS One. 2017 Feb 16;12(2):e0172445.​

  • Boelt SG, Norn C, Rasmussen MI, André I, Čiplys E, Slibinskas R, Houen G, Højrup P. Mapping the Ca(2+) induced structural change in calreticulin. J Proteomics. 2016 Jun 16;142:138-48.

  • Lizatović R, Aurelius O, Stenstrom O, Drakenberg T, Akke M, Logan DT and André I. A De Novo Designed Coiled-Coil Peptide with a Reversible pH-Induced Oligomerization Switch. Structure 2016; doi: 10.1016/j.str.2016.03.027.

  • Norn CN and André I. Computational design of protein self-assembly. Current Opinion in Structural Biology 2016; pp 39-45. doi:10.1016/j.sbi.2016.04.002. 

  • Potrzebowski W, André I. "Automated determination of fibrillar structures by simultaneous model building and fiber diffraction refinement". Nat Methods. 2015; doi: 10.1038/nmeth.3399

  • Rämisch S, Lizatović R, André I. Automated de novo phasing and model building of coiled-coil proteins. Acta Cryst D. 2015;D71. 

  • Kaltofen S, Li C, Huang PS, Serpell LC, Barth A, André I. Computational de novo design of a self-assembling Peptide with predefined structure. Journal of molecular biology. 2015;427:550-62. 

  • Rämisch S, Weiniger U, Martinsson J, Akke M and Andre I "Computational design of Leucine-Rich Repeat proteins with a defined geometry" Proc Natl Acad Sci, 2014, pii: 201413638.

  • Rämisch S, Lizatovic and Andre I. "Exploring alternate states and oligomerization preferences of coiled-coils by de novo structure modeling" Proteins, 2014. doi: 10.1002/prot.24729 

  • André I, Corn J. "The RosettaCon 2012 Special Collection: Code Writ on Water, Documentation Writ in Stone." PLoS One. 2013 Sep 26;8(9):e73775. doi: 10.1371/journal.pone.0073775.

  • King NP, Sheffler W, Sawaya MR, Vollmar BS, Sumida JP, André I, Gonen T, Yeates TO, Baker D. "Computational design of self-assembling protein nanomaterials with atomic level accuracy". (2012) Science. Jun 1;336(6085):1171-4. 

  • Meisner J, Maehigashi T, Andre I, Dunham CM and Moran, Jr CP. “Structure of the Basal Components of a Novel Bacterial Transporter”. (2012) Proc Natl Acad Sci U S A. Apr 3;109(14):5446-51.   

  • Elkin M, Andre I and Lukatsky, D. Energy Fluctuations Shape Free Energy of Nonspecific Biomolecular Interactions. Journal of Statistical Physics (2012), 10.1007/s10955-012-0421-1.

  • Dimaio F, Leaver-Fay A, Bradley P, Baker D, André I. Modeling Symmetric Macromolecular Structures in Rosetta3. PLoS One. 2011;6(6):e20450. 

Andrelab

We combine computational and experimental methods to understand the structure, interactions and evolution of proteins.
copyright © andrelab.org {2019}, Lund University

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